SKA03384.1 protein (Eubacterium ruminantium)

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Score

SKA03384.1

Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains. (302 aa)

Predicted Functional Partners:

SKA03370.1

0.719

SJZ87472.1

0.557

SJZ83315.1

0.433

SKA02883.1

0.414

sigA

0.412

rpoZ

0.412

rpoB

0.412

rpoC

0.412

SKA03351.1

0.400

Your Current Organism:

Eubacterium ruminantium

NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SJZ83315.1	SKA03384.1	SAMN02745110_01727	SAMN02745110_02404	4Fe-4S dicluster domain-containing protein.	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	0.433
SJZ87472.1	SKA03384.1	SAMN02745110_01848	SAMN02745110_02404	Hypothetical protein.	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	0.557
SKA02883.1	SKA03384.1	SAMN02745110_02381	SAMN02745110_02404	Transcriptional regulator, TetR family.	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	0.414
SKA03351.1	SKA03370.1	SAMN02745110_02402	SAMN02745110_02403	3-methyladenine DNA glycosylase AlkD.	DNA repair photolyase.	0.511
SKA03351.1	SKA03384.1	SAMN02745110_02402	SAMN02745110_02404	3-methyladenine DNA glycosylase AlkD.	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	0.400
SKA03370.1	SKA03351.1	SAMN02745110_02403	SAMN02745110_02402	DNA repair photolyase.	3-methyladenine DNA glycosylase AlkD.	0.511
SKA03370.1	SKA03384.1	SAMN02745110_02403	SAMN02745110_02404	DNA repair photolyase.	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	0.719
SKA03384.1	SJZ83315.1	SAMN02745110_02404	SAMN02745110_01727	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	4Fe-4S dicluster domain-containing protein.	0.433
SKA03384.1	SJZ87472.1	SAMN02745110_02404	SAMN02745110_01848	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	Hypothetical protein.	0.557
SKA03384.1	SKA02883.1	SAMN02745110_02404	SAMN02745110_02381	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	Transcriptional regulator, TetR family.	0.414
SKA03384.1	SKA03351.1	SAMN02745110_02404	SAMN02745110_02402	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	3-methyladenine DNA glycosylase AlkD.	0.400
SKA03384.1	SKA03370.1	SAMN02745110_02404	SAMN02745110_02403	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	DNA repair photolyase.	0.719
SKA03384.1	rpoB	SAMN02745110_02404	SAMN02745110_01999	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.412
SKA03384.1	rpoC	SAMN02745110_02404	SAMN02745110_02000	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.412
SKA03384.1	rpoZ	SAMN02745110_02404	SAMN02745110_01282	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.412
SKA03384.1	sigA	SAMN02745110_02404	SAMN02745110_00285	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.412
rpoB	SKA03384.1	SAMN02745110_01999	SAMN02745110_02404	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	0.412
rpoB	rpoC	SAMN02745110_01999	SAMN02745110_02000	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoZ	SAMN02745110_01999	SAMN02745110_01282	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.999
rpoB	sigA	SAMN02745110_01999	SAMN02745110_00285	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.999