SKA05473.1 protein (Eubacterium ruminantium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SKA05473.1

Cpl-7 lysozyme C-terminal domain-containing protein. (1983 aa)

Predicted Functional Partners:

SJZ35482.1

0.915

SJZ70640.1

0.871

SJZ71749.1

0.871

guaA

0.857

SJZ35874.1

0.852

scpA

0.847

SKA02836.1

0.832

SJZ73937.1

0.671

SKA05442.1

0.648

SJZ42676.1

0.625

Your Current Organism:

Eubacterium ruminantium

NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SJZ35482.1	SJZ35874.1	SAMN02745110_00047	SAMN02745110_00069	CheY chemotaxis protein or a CheY-like REC (receiver) domain.	Hypothetical protein.	0.999
SJZ35482.1	SJZ70640.1	SAMN02745110_00047	SAMN02745110_01334	CheY chemotaxis protein or a CheY-like REC (receiver) domain.	Signal transduction histidine kinase.	0.999
SJZ35482.1	SJZ71749.1	SAMN02745110_00047	SAMN02745110_01372	CheY chemotaxis protein or a CheY-like REC (receiver) domain.	Signal transduction histidine kinase.	0.999
SJZ35482.1	SJZ73937.1	SAMN02745110_00047	SAMN02745110_01462	CheY chemotaxis protein or a CheY-like REC (receiver) domain.	Two-component system, NarL family, sensor histidine kinase DegS.	0.999
SJZ35482.1	SKA02836.1	SAMN02745110_00047	SAMN02745110_02379	CheY chemotaxis protein or a CheY-like REC (receiver) domain.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.986
SJZ35482.1	SKA05473.1	SAMN02745110_00047	SAMN02745110_02464	CheY chemotaxis protein or a CheY-like REC (receiver) domain.	Cpl-7 lysozyme C-terminal domain-containing protein.	0.915
SJZ35482.1	guaA	SAMN02745110_00047	SAMN02745110_00674	CheY chemotaxis protein or a CheY-like REC (receiver) domain.	GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.	0.555
SJZ35874.1	SJZ35482.1	SAMN02745110_00069	SAMN02745110_00047	Hypothetical protein.	CheY chemotaxis protein or a CheY-like REC (receiver) domain.	0.999
SJZ35874.1	SJZ70640.1	SAMN02745110_00069	SAMN02745110_01334	Hypothetical protein.	Signal transduction histidine kinase.	0.999
SJZ35874.1	SJZ71749.1	SAMN02745110_00069	SAMN02745110_01372	Hypothetical protein.	Signal transduction histidine kinase.	0.999
SJZ35874.1	SJZ73937.1	SAMN02745110_00069	SAMN02745110_01462	Hypothetical protein.	Two-component system, NarL family, sensor histidine kinase DegS.	0.993
SJZ35874.1	SKA02836.1	SAMN02745110_00069	SAMN02745110_02379	Hypothetical protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.983
SJZ35874.1	SKA05473.1	SAMN02745110_00069	SAMN02745110_02464	Hypothetical protein.	Cpl-7 lysozyme C-terminal domain-containing protein.	0.852
SJZ42676.1	SKA05473.1	SAMN02745110_00421	SAMN02745110_02464	RHS repeat-associated core domain-containing protein.	Cpl-7 lysozyme C-terminal domain-containing protein.	0.625
SJZ70640.1	SJZ35482.1	SAMN02745110_01334	SAMN02745110_00047	Signal transduction histidine kinase.	CheY chemotaxis protein or a CheY-like REC (receiver) domain.	0.999
SJZ70640.1	SJZ35874.1	SAMN02745110_01334	SAMN02745110_00069	Signal transduction histidine kinase.	Hypothetical protein.	0.999
SJZ70640.1	SJZ71749.1	SAMN02745110_01334	SAMN02745110_01372	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.999
SJZ70640.1	SJZ73937.1	SAMN02745110_01334	SAMN02745110_01462	Signal transduction histidine kinase.	Two-component system, NarL family, sensor histidine kinase DegS.	0.999
SJZ70640.1	SKA02836.1	SAMN02745110_01334	SAMN02745110_02379	Signal transduction histidine kinase.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.983
SJZ70640.1	SKA05473.1	SAMN02745110_01334	SAMN02745110_02464	Signal transduction histidine kinase.	Cpl-7 lysozyme C-terminal domain-containing protein.	0.871