STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103695642Sodium channel modifier 1-like. (247 aa)    
Predicted Functional Partners:
LOC103723256
Armadillo repeat-containing protein 7.
    
 
 0.878
LOC103707227
Zinc finger CCCH domain-containing protein 1.
   
   0.871
LOC103719620
Splicing factor 3B subunit 1.
    
 
 0.869
LOC103698069
Splicing factor 3B subunit 2-like.
    
   0.865
LOC103711492
pre-mRNA-processing-splicing factor 8A.
    
   0.865
LOC103712080
Uncharacterized protein LOC103712080.
    
   0.816
LOC103714849
Spliceosome-associated protein 130 A.
    
   0.816
LOC103715760
Cell division cycle 5-like protein.
    
   0.793
LOC103719325
Cell division cycle 5-like protein.
    
   0.793
LOC103705027
Splicing factor 3B subunit 6-like protein.
    
   0.778
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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