STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103697949Perakine reductase-like. (350 aa)    
Predicted Functional Partners:
LOC103695903
Protein SEH1 isoform X1; Belongs to the WD repeat SEC13 family.
    
 0.565
LOC103707560
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.527
LOC103697947
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.527
LOC103703893
Ribosomal protein L37; Binds to the 23S rRNA.
    
 0.498
LOC103708991
Ribosomal protein L37; Binds to the 23S rRNA.
    
 0.498
LOC103715423
Ribosomal protein L37; Binds to the 23S rRNA.
    
 0.498
LOC103721543
Ribosomal protein L37; Binds to the 23S rRNA.
    
 0.498
LOC103723389
Serine--glyoxylate aminotransferase isoform X1.
   
 
  0.476
LOC103707340
Protein transport protein SEC13 homolog B-like; Belongs to the WD repeat SEC13 family.
    
 0.444
LOC103710412
Protein transport protein SEC13 homolog B-like; Belongs to the WD repeat SEC13 family.
    
 0.444
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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