LOC103698772 protein (Phoenix dactylifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103698772

Mitochondrial import receptor subunit TOM40-1-like. (256 aa)

Predicted Functional Partners:

LOC103715427

0.970

LOC103719738

0.922

LOC103701577

0.922

LOC103700872

0.883

LOC103710345

0.828

LOC103718104

0.828

LOC103722779

0.828

LOC103705720

0.790

LOC103720379

0.659

LOC103722573

0.659

Your Current Organism:

Phoenix dactylifera

NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103698772	LOC103700872	A0A2H3X6F7	A0A2H3XAL5	Mitochondrial import receptor subunit TOM40-1-like.	Mitochondrial import inner membrane translocase subunit TIM50.	0.883
LOC103698772	LOC103701577	A0A2H3X6F7	A0A2H3ZKF5	Mitochondrial import receptor subunit TOM40-1-like.	Mitochondrial outer membrane import complex protein METAXIN.	0.922
LOC103698772	LOC103705720	A0A2H3X6F7	A0A2H3XRN7	Mitochondrial import receptor subunit TOM40-1-like.	Outer envelope protein 80, chloroplastic isoform X1.	0.790
LOC103698772	LOC103710345	A0A2H3X6F7	A0A2H3Y7A3	Mitochondrial import receptor subunit TOM40-1-like.	Uncharacterized protein LOC103710345.	0.828
LOC103698772	LOC103715427	A0A2H3X6F7	A0A2H3YN67	Mitochondrial import receptor subunit TOM40-1-like.	Mitochondrial import receptor subunit TOM9-2-like.	0.970
LOC103698772	LOC103718104	A0A2H3X6F7	A0A2H3YWS7	Mitochondrial import receptor subunit TOM40-1-like.	SAM50-like protein SPAC17C9.06.	0.828
LOC103698772	LOC103719738	A0A2H3X6F7	A0A2H3Z310	Mitochondrial import receptor subunit TOM40-1-like.	Mitochondrial import receptor subunit TOM40-1-like.	0.922
LOC103698772	LOC103720379	A0A2H3X6F7	A0A2H3Z522	Mitochondrial import receptor subunit TOM40-1-like.	Mitochondrial import inner membrane translocase subunit Tim13-like; Belongs to the small Tim family.	0.659
LOC103698772	LOC103722573	A0A2H3X6F7	A0A2H3ZBL6	Mitochondrial import receptor subunit TOM40-1-like.	Mitochondrial import inner membrane translocase subunit Tim13-like; Belongs to the small Tim family.	0.659
LOC103698772	LOC103722779	A0A2H3X6F7	A0A2H3ZD34	Mitochondrial import receptor subunit TOM40-1-like.	SAM50-like protein SPAC17C9.06.	0.828
LOC103700872	LOC103698772	A0A2H3XAL5	A0A2H3X6F7	Mitochondrial import inner membrane translocase subunit TIM50.	Mitochondrial import receptor subunit TOM40-1-like.	0.883
LOC103700872	LOC103701577	A0A2H3XAL5	A0A2H3ZKF5	Mitochondrial import inner membrane translocase subunit TIM50.	Mitochondrial outer membrane import complex protein METAXIN.	0.619
LOC103700872	LOC103710345	A0A2H3XAL5	A0A2H3Y7A3	Mitochondrial import inner membrane translocase subunit TIM50.	Uncharacterized protein LOC103710345.	0.499
LOC103700872	LOC103715427	A0A2H3XAL5	A0A2H3YN67	Mitochondrial import inner membrane translocase subunit TIM50.	Mitochondrial import receptor subunit TOM9-2-like.	0.767
LOC103700872	LOC103718104	A0A2H3XAL5	A0A2H3YWS7	Mitochondrial import inner membrane translocase subunit TIM50.	SAM50-like protein SPAC17C9.06.	0.499
LOC103700872	LOC103719738	A0A2H3XAL5	A0A2H3Z310	Mitochondrial import inner membrane translocase subunit TIM50.	Mitochondrial import receptor subunit TOM40-1-like.	0.883
LOC103700872	LOC103720379	A0A2H3XAL5	A0A2H3Z522	Mitochondrial import inner membrane translocase subunit TIM50.	Mitochondrial import inner membrane translocase subunit Tim13-like; Belongs to the small Tim family.	0.623
LOC103700872	LOC103722573	A0A2H3XAL5	A0A2H3ZBL6	Mitochondrial import inner membrane translocase subunit TIM50.	Mitochondrial import inner membrane translocase subunit Tim13-like; Belongs to the small Tim family.	0.623
LOC103700872	LOC103722779	A0A2H3XAL5	A0A2H3ZD34	Mitochondrial import inner membrane translocase subunit TIM50.	SAM50-like protein SPAC17C9.06.	0.499
LOC103701577	LOC103698772	A0A2H3ZKF5	A0A2H3X6F7	Mitochondrial outer membrane import complex protein METAXIN.	Mitochondrial import receptor subunit TOM40-1-like.	0.922