STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103700973Serine/threonine-protein kinase prpf4B. (1085 aa)    
Predicted Functional Partners:
LOC103721117
Protein STABILIZED1.
    
 
 0.928
LOC103719620
Splicing factor 3B subunit 1.
   
 
 0.909
LOC103723556
110 kDa U5 small nuclear ribonucleoprotein component CLO-like.
    
 
 0.897
LOC103711492
pre-mRNA-processing-splicing factor 8A.
    
 
 0.893
LOC103719394
SART-1 family protein DOT2 isoform X1.
   
 
0.832
LOC103701632
U4/U6 small nuclear ribonucleoprotein Prp31 homolog.
    
 
 0.828
LOC103708096
LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein Prp31 homolog.
    
 
 0.828
LOC103719061
U4/U6.U5 tri-snRNP-associated protein 2-like.
    
   0.817
LOC103701668
RNA-binding protein 25 isoform X1.
   
  0.784
LOC103720448
Uncharacterized protein LOC103720448 isoform X1.
   
  0.784
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.