STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103701556Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)    
Predicted Functional Partners:
LOC103714338
Probable histone acetyltransferase type B catalytic subunit.
    
 0.956
LOC103712849
DNA-directed RNA polymerases I and III subunit rpac1.
    
 0.920
LOC103722428
Actin-related protein 4; Belongs to the actin family.
    
 0.920
LOC103715915
Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.
 
  
 0.920
LOC103707960
Histone H3; Belongs to the histone H3 family.
 
 
 0.895
LOC103716902
Histone H3; Belongs to the histone H3 family.
 
 
 0.895
LOC103721204
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.895
LOC103721722
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.895
LOC103697899
ubiquitin-60S ribosomal protein L40.
    
 0.892
LOC103701203
Histone H3; Belongs to the histone H3 family.
 
 
 0.892
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.