STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103701586Squamosa promoter-binding-like protein 10. (404 aa)    
Predicted Functional Partners:
LOC103697200
Protein NBR1 homolog.
    
 0.704
LOC103712004
Protein NBR1 homolog.
    
 0.704
LOC103703909
E3 ubiquitin-protein ligase PRT1.
    
 0.699
LOC103712587
LOW QUALITY PROTEIN: protein TONSOKU.
    
 0.613
LOC103716575
Ankyrin-1.
    
 0.594
LOC103701991
RING-box protein 1a-like.
    
 0.558
LOC103711519
RING-box protein 1a.
    
 0.558
LOC103712331
NEDD8-activating enzyme E1 catalytic subunit.
     
 0.507
LOC103707291
Cullin-1-like; Belongs to the cullin family.
    
 0.479
LOC103716049
Cullin-1; Belongs to the cullin family.
    
 0.479
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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