LOC103704823 protein (Phoenix dactylifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103704823

Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1. (213 aa)

Predicted Functional Partners:

LOC103719881

0.571

LOC103719642

0.570

LOC103701161

0.567

LOC103710651

0.562

LOC103701407

0.515

LOC103723825

0.514

LOC103715668

0.485

LOC103697507

0.468

LOC103717484

0.453

LOC103719433

0.452

Your Current Organism:

Phoenix dactylifera

NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103697507	LOC103701407	A0A2H3X355	A0A2H3ZL14	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	DEAD-box ATP-dependent RNA helicase FANCM.	0.708
LOC103697507	LOC103704823	A0A2H3X355	A0A2H3XP37	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1.	0.468
LOC103701161	LOC103704823	A0A3Q0HTM2	A0A2H3XP37	Uncharacterized protein ycf39 isoform X1.	Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1.	0.567
LOC103701161	LOC103710651	A0A3Q0HTM2	A0A2H3Y8C8	Uncharacterized protein ycf39 isoform X1.	psbP-like protein 1, chloroplastic isoform X1.	0.447
LOC103701161	LOC103715668	A0A3Q0HTM2	A0A2H3YNY1	Uncharacterized protein ycf39 isoform X1.	Light-harvesting complex-like protein OHP1, chloroplastic.	0.627
LOC103701161	LOC103719642	A0A3Q0HTM2	A0A2H3Z1X7	Uncharacterized protein ycf39 isoform X1.	Protein HHL1, chloroplastic.	0.569
LOC103701161	LOC103719881	A0A3Q0HTM2	A0A2H3Z3K5	Uncharacterized protein ycf39 isoform X1.	Protein SPA, chloroplastic.	0.645
LOC103701407	LOC103697507	A0A2H3ZL14	A0A2H3X355	DEAD-box ATP-dependent RNA helicase FANCM.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.708
LOC103701407	LOC103704823	A0A2H3ZL14	A0A2H3XP37	DEAD-box ATP-dependent RNA helicase FANCM.	Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1.	0.515
LOC103704823	LOC103697507	A0A2H3XP37	A0A2H3X355	Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.468
LOC103704823	LOC103701161	A0A2H3XP37	A0A3Q0HTM2	Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1.	Uncharacterized protein ycf39 isoform X1.	0.567
LOC103704823	LOC103701407	A0A2H3XP37	A0A2H3ZL14	Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1.	DEAD-box ATP-dependent RNA helicase FANCM.	0.515
LOC103704823	LOC103710651	A0A2H3XP37	A0A2H3Y8C8	Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1.	psbP-like protein 1, chloroplastic isoform X1.	0.562
LOC103704823	LOC103715668	A0A2H3XP37	A0A2H3YNY1	Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1.	Light-harvesting complex-like protein OHP1, chloroplastic.	0.485
LOC103704823	LOC103717484	A0A2H3XP37	A0A3Q0IFP7	Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1.	Protein phosphatase; Belongs to the PP2C family.	0.453
LOC103704823	LOC103719433	A0A2H3XP37	A0A2H3Z192	Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1.	Protease Do-like 1, chloroplastic.	0.452
LOC103704823	LOC103719642	A0A2H3XP37	A0A2H3Z1X7	Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1.	Protein HHL1, chloroplastic.	0.570
LOC103704823	LOC103719881	A0A2H3XP37	A0A2H3Z3K5	Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1.	Protein SPA, chloroplastic.	0.571
LOC103704823	LOC103723825	A0A2H3XP37	A0A2H3ZGF5	Protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1.	Serine/threonine-protein kinase-like protein At5g23170; Belongs to the protein kinase superfamily.	0.514
LOC103710651	LOC103701161	A0A2H3Y8C8	A0A3Q0HTM2	psbP-like protein 1, chloroplastic isoform X1.	Uncharacterized protein ycf39 isoform X1.	0.447