STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103705345Riboflavin biosynthesis protein PYRD, chloroplastic. (406 aa)    
Predicted Functional Partners:
LOC103705935
Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic isoform X1.
 
  
 0.988
LOC103718728
Probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic isoform X1.
 
  
 0.984
LOC103696140
Riboflavin biosynthesis protein PYRR, chloroplastic.
  
  
0.927
LOC103708543
Flavin mononucleotide hydrolase 1, chloroplatic isoform X1.
     
 0.914
LOC103701681
tRNA-specific adenosine deaminase TAD3 isoform X1.
   
 0.912
LOC103705545
5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic.
     
  0.900
LOC103701887
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
  
 
 0.804
LOC103704597
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
  
 
 0.804
LOC103718953
Riboflavin synthase.
 
   
 0.783
LOC103715390
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
 
   
 0.781
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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