STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103708030Pentatricopeptide repeat-containing protein At2g41720 isoform X2. (678 aa)    
Predicted Functional Partners:
LOC103722329
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
  
 
  0.500
rps12-2
30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits.
    
 
 0.475
LOC103714942
CRS2-associated factor 2, chloroplastic.
   
 
 0.447
LOC103709873
LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATXR3-like.
  
 
  0.438
LOC103719358
Histone-lysine N-methyltransferase ATXR3-like.
  
 
  0.432
LOC103700440
Protein THYLAKOID ASSEMBLY 8, chloroplastic-like.
      
 0.414
LOC103702875
Protein THYLAKOID ASSEMBLY 8, chloroplastic-like.
      
 0.414
LOC103724114
Uncharacterized protein LOC103724114.
  
     0.410
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.