STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103708400Chorismate synthase. (442 aa)    
Predicted Functional Partners:
LOC103700862
Chorismate mutase.
  
 
 0.991
LOC103696276
Chorismate mutase.
  
 
 0.990
LOC103714256
Chorismate mutase.
  
 
 0.990
LOC103717395
3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.
 
 0.985
LOC103723775
3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.
 
 0.985
LOC103711108
Anthranilate synthase beta subunit 2, chloroplastic-like isoform X1.
  
 
 0.982
LOC103713292
Anthranilate synthase beta subunit 2, chloroplastic-like.
  
 
 0.982
LOC103699176
Anthranilate synthase alpha subunit 1, chloroplastic-like isoform X1.
  
 
 0.979
LOC103706601
Protein PHYLLO, chloroplastic isoform X1.
  
 
 0.974
LOC103723441
Isochorismate synthase 2, chloroplastic.
  
 
 0.958
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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