STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103708698Putative tRNA pseudouridine synthase Pus10 isoform X1. (549 aa)    
Predicted Functional Partners:
LOC103718900
Protein Simiate.
    
   0.865
LOC103717625
tRNA wybutosine-synthesizing protein 2/3/4 isoform X1.
   
  
 0.747
LOC103707335
Multisubstrate pseudouridine synthase 7 isoform X1.
   
  
 0.633
LOC103722699
tRNA pseudouridine(38/39) synthase isoform X1.
   
  
 0.588
LOC103716083
H/ACA ribonucleoprotein complex subunit 3-like protein.
     
 0.569
LOC103704005
H/ACA ribonucleoprotein complex subunit 3-like protein.
     
 0.569
LOC103696047
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
   
  
 0.549
LOC103714617
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
   
  
 0.549
LOC103702097
Putative tRNA pseudouridine synthase isoform X1.
   
  
 0.529
LOC103723796
tRNA pseudouridine synthase A-like.
   
  
 0.529
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.