STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103708999Mitoferrin-like; Belongs to the mitochondrial carrier (TC 2.A.29) family. (318 aa)    
Predicted Functional Partners:
LOC103711635
asparagine--tRNA ligase, chloroplastic/mitochondrial isoform X1.
 
      0.894
LOC103708028
asparagine--tRNA ligase, cytoplasmic 1-like.
 
      0.738
LOC103706570
Frataxin, mitochondrial.
    
 
 0.604
LOC103723975
Frataxin, mitochondrial-like isoform X1.
    
 
 0.604
LOC103723460
Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.
   
  
 0.528
LOC103702498
Probable transmembrane GTPase FZO-like, chloroplastic isoform X2.
      
 0.517
LOC103709706
ABC transporter B family member 25, mitochondrial.
    
 
 0.470
LOC103702171
ABC transporter B family member 23, mitochondrial-like isoform X1.
    
 
 0.470
LOC103709146
Protein misato homolog 1 isoform X1.
      
 0.450
LOC103710028
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
 
 
    0.439
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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