STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103709415RGG repeats nuclear RNA binding protein A-like. (444 aa)    
Predicted Functional Partners:
LOC103706732
40S ribosomal protein S28.
   
 
 0.828
LOC103704554
G-box-binding factor 1-like isoform X1.
   
   0.817
LOC103719675
60S ribosomal protein L5-1-like.
   
   0.817
LOC103704516
60S ribosomal protein L4.
   
 
 0.809
LOC103716166
60S ribosomal protein L4-like.
   
 
 0.809
LOC103702308
60S ribosomal protein L31.
   
 
 0.796
LOC103717742
60S ribosomal protein L31-like.
   
 
 0.796
LOC103697899
ubiquitin-60S ribosomal protein L40.
   
   0.791
LOC103706959
LOW QUALITY PROTEIN: 60S ribosomal protein L21-2-like.
   
 
 0.778
LOC103711864
60S ribosomal protein L21-1.
   
 
 0.778
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.