STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103709484DEAD-box ATP-dependent RNA helicase 35. (619 aa)    
Predicted Functional Partners:
LOC103697372
NF-kappa-B-activating protein.
    
  0.839
LOC103715399
Peptidyl-prolyl cis-trans isomerase CYP71 isoform X1.
   
 0.800
LOC103717682
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.800
LOC103696901
Replication stress response regulator SDE2.
     
 0.766
LOC103701431
pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7.
   
 0.750
LOC103718886
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
     
 0.722
LOC103716524
Coiled-coil domain-containing protein 12.
   
 
  0.692
LOC103712937
DEAD-box ATP-dependent RNA helicase 56-like isoform X1.
  
0.690
LOC103719228
DEAD-box ATP-dependent RNA helicase 56 isoform X1.
  
0.689
LOC103701784
LOW QUALITY PROTEIN: ATP-dependent RNA helicase DEAH12, chloroplastic-like.
   
 0.686
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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