STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103709593LOW QUALITY PROTEIN: probable serine/threonine-protein kinase SIS8. (1018 aa)    
Predicted Functional Partners:
LOC103716982
DEAD-box ATP-dependent RNA helicase 36 isoform X1; Belongs to the DEAD box helicase family.
    
 0.602
LOC103715780
Tetratricopeptide repeat protein 1.
    
 
 0.563
LOC103701258
Auxin transporter-like protein 3.
    
 0.464
LOC103704334
Serine/threonine-protein kinase ATG1t.
  
 
 
0.424
LOC103702642
Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.
      
 0.418
LOC103703909
E3 ubiquitin-protein ligase PRT1.
   
 0.406
LOC103701272
CBS domain-containing protein CBSCBSPB3.
    
 0.401
LOC103713700
CBS domain-containing protein CBSCBSPB1-like.
    
 0.401
LOC103719119
CBS domain-containing protein CBSCBSPB1-like isoform X1.
    
 0.401
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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