STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103709768Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (667 aa)    
Predicted Functional Partners:
LOC103716702
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
  
 0.893
LOC103724355
DNA-directed RNA polymerase III subunit 1-like.
 
  
 0.847
LOC103715470
Uncharacterized protein LOC103715470.
  
   0.752
LOC103709224
Uncharacterized protein LOC103709224.
  
   0.728
LOC103709184
LOW QUALITY PROTEIN: uncharacterized protein LOC103709184.
  
   0.728
LOC103702956
Uncharacterized protein LOC103702956.
   
 
 0.727
LOC103707061
Uncharacterized protein LOC103707061.
   
 
 0.727
LOC103703492
30S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.701
LOC103712302
30S ribosomal protein S9, chloroplastic; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.701
rps4
30S ribosomal protein S4, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. Belongs to the universal ribosomal protein uS4 family.
   
 
 0.693
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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