STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103710115Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (609 aa)    
Predicted Functional Partners:
LOC103702412
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
 0.957
LOC103702003
Transcription initiation factor TFIID subunit 9.
    
 0.954
LOC103697899
ubiquitin-60S ribosomal protein L40.
    
  0.935
LOC103700871
Transcriptional adapter.
    
 0.930
LOC103714915
Transcriptional adapter.
    
 0.930
LOC103712060
Uncharacterized protein LOC103712060 isoform X1.
    
 0.914
LOC103711623
Histone acetyltransferase GCN5.
    
 0.914
LOC103700526
Histone acetyltransferase GCN5-like.
    
 0.914
LOC103713576
Transcription initiation factor TFIID subunit 6-like.
    
 0.899
LOC103706717
SAGA-associated factor 11.
    
 
 0.883
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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