STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103710644Ubiquitin-conjugating enzyme E2 28-like; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)    
Predicted Functional Partners:
LOC103702862
E3 ubiquitin-protein ligase UPL4-like.
    
 0.871
LOC103718136
E3 ubiquitin-protein ligase UPL4-like isoform X1.
    
 0.871
LOC103714627
E3 ubiquitin-protein ligase UPL3-like.
    
 0.865
LOC103706183
E3 ubiquitin-protein ligase UPL3-like.
    
 0.865
LOC103697899
ubiquitin-60S ribosomal protein L40.
   
 0.859
LOC103702563
E3 ubiquitin-protein ligase KEG-like.
    
 0.834
LOC103716443
E3 ubiquitin-protein ligase KEG.
    
 0.834
LOC103720289
Anaphase-promoting complex subunit 11.
    
 0.804
LOC103703909
E3 ubiquitin-protein ligase PRT1.
    
 0.722
LOC103703898
Peroxisome biogenesis protein 12; Required for peroxisome biogenesis and for PTS1- and PTS2- dependent protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
    
 0.700
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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