STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103711514tryptophan--tRNA ligase, chloroplastic/mitochondrial isoform X1; Belongs to the class-I aminoacyl-tRNA synthetase family. (423 aa)    
Predicted Functional Partners:
LOC103695975
tryptophan--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.949
LOC103721827
tryptophan--tRNA ligase, cytoplasmic-like; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.949
LOC103723528
Probable methionine--tRNA ligase isoform X1; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.771
LOC103714920
LOW QUALITY PROTEIN: probable methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.771
LOC103710988
serine--tRNA ligase, chloroplastic/mitochondrial isoform X1.
  
 
 0.749
LOC103696254
leucine--tRNA ligase, chloroplastic/mitochondrial isoform X1; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.723
LOC103709145
phenylalanine--tRNA ligase, chloroplastic/mitochondrial isoform X1.
  
  
 0.722
LOC103715927
phenylalanine--tRNA ligase beta subunit, cytoplasmic isoform X1.
  
  
 0.721
LOC103706549
serine--tRNA ligase-like.
  
 
 0.714
LOC103721234
serine--tRNA ligase-like.
  
 
 0.714
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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