LOC103712080 protein (Phoenix dactylifera) - STRING interaction network

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second shell of interactors

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a 3D structure is known or predicted

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

LOC103712080

Uncharacterized protein LOC103712080. (480 aa)

Predicted Functional Partners:

LOC103719620

0.983

LOC103698069

0.982

LOC103701697

0.981

LOC103708324

0.978

LOC103719116

0.978

LOC103697458

0.977

LOC103711492

0.977

LOC103701094

0.975

LOC103700706

0.970

LOC103704291

0.970

Your Current Organism:

Phoenix dactylifera

NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103697458	LOC103698069	A0A2H3X2Z6	A0A2H3X4M2	Splicing factor 3A subunit 2.	Splicing factor 3B subunit 2-like.	0.990
LOC103697458	LOC103700706	A0A2H3X2Z6	A0A2H3XA89	Splicing factor 3A subunit 2.	Splicing factor subunit; Belongs to the SF3B5 family.	0.981
LOC103697458	LOC103701094	A0A2H3X2Z6	A0A2H3XBF9	Splicing factor 3A subunit 2.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.987
LOC103697458	LOC103701697	A0A2H3X2Z6	A0A2H3XD79	Splicing factor 3A subunit 2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.977
LOC103697458	LOC103704291	A0A2H3X2Z6	A0A2H3XM98	Splicing factor 3A subunit 2.	Splicing factor subunit; Belongs to the SF3B5 family.	0.981
LOC103697458	LOC103708324	A0A2H3X2Z6	A0A2H3Y0C7	Splicing factor 3A subunit 2.	Splicing factor SF3a60 homolog.	0.999
LOC103697458	LOC103711492	A0A2H3X2Z6	A0A2H3YAG8	Splicing factor 3A subunit 2.	pre-mRNA-processing-splicing factor 8A.	0.971
LOC103697458	LOC103712080	A0A2H3X2Z6	A0A2H3YCH3	Splicing factor 3A subunit 2.	Uncharacterized protein LOC103712080.	0.977
LOC103697458	LOC103719116	A0A2H3X2Z6	A0A2H3YZW8	Splicing factor 3A subunit 2.	PHD finger-like domain-containing protein 5B.	0.989
LOC103697458	LOC103719620	A0A2H3X2Z6	A0A3Q0IE10	Splicing factor 3A subunit 2.	Splicing factor 3B subunit 1.	0.989
LOC103698069	LOC103697458	A0A2H3X4M2	A0A2H3X2Z6	Splicing factor 3B subunit 2-like.	Splicing factor 3A subunit 2.	0.990
LOC103698069	LOC103700706	A0A2H3X4M2	A0A2H3XA89	Splicing factor 3B subunit 2-like.	Splicing factor subunit; Belongs to the SF3B5 family.	0.981
LOC103698069	LOC103701094	A0A2H3X4M2	A0A2H3XBF9	Splicing factor 3B subunit 2-like.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.990
LOC103698069	LOC103701697	A0A2H3X4M2	A0A2H3XD79	Splicing factor 3B subunit 2-like.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.981
LOC103698069	LOC103704291	A0A2H3X4M2	A0A2H3XM98	Splicing factor 3B subunit 2-like.	Splicing factor subunit; Belongs to the SF3B5 family.	0.981
LOC103698069	LOC103708324	A0A2H3X4M2	A0A2H3Y0C7	Splicing factor 3B subunit 2-like.	Splicing factor SF3a60 homolog.	0.992
LOC103698069	LOC103711492	A0A2H3X4M2	A0A2H3YAG8	Splicing factor 3B subunit 2-like.	pre-mRNA-processing-splicing factor 8A.	0.959
LOC103698069	LOC103712080	A0A2H3X4M2	A0A2H3YCH3	Splicing factor 3B subunit 2-like.	Uncharacterized protein LOC103712080.	0.982
LOC103698069	LOC103719116	A0A2H3X4M2	A0A2H3YZW8	Splicing factor 3B subunit 2-like.	PHD finger-like domain-containing protein 5B.	0.990
LOC103698069	LOC103719620	A0A2H3X4M2	A0A3Q0IE10	Splicing factor 3B subunit 2-like.	Splicing factor 3B subunit 1.	0.994

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Network Stats

number of nodes:

11

number of edges:

27

average node degree:

4.91

avg. local clustering coefficient:

0.764

expected number of edges:

31

PPI enrichment p-value:

0.768

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016579

Protein deubiquitination

6 of 58

2.25

4.1

3.09e-09

GO:1903051

Negative regulation of proteolysis involved in protein catabolic process

3 of 12

2.63

2.18

9.31e-05

GO:0006511

Ubiquitin-dependent protein catabolic process

5 of 299

1.46

1.38

0.00036

GO:0030162

Regulation of proteolysis

4 of 240

1.45

1.08

0.0032

GO:0007094

Mitotic spindle assembly checkpoint signaling

2 of 15

2.36

1.05

0.0114

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004843

Cysteine-type deubiquitinase activity

5 of 48

2.25

3.42

1.26e-07

GO:0004197

Cysteine-type endopeptidase activity

5 of 71

2.08

3.16

2.01e-07

GO:0140096

Catalytic activity, acting on a protein

6 of 1524

0.83

0.51

0.0219

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005634

Nucleus

9 of 3640

0.63

0.42

0.0151

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:9211

Mixed, incl. Peptidase C19, ubiquitin carboxyl-terminal hydrolase, and HELP motif

6 of 12

2.93

6.63

3.60e-13

CL:9129

Processing of Intronless Pre-mRNAs, and Peptidase C19, ubiquitin carboxyl-terminal hydrolase

7 of 53

2.35

5.7

9.91e-13

CL:9214

Regulation of protein localization to cell surface, and Peptidase C19, ubiquitin carboxyl-terminal hydrolase

4 of 6

3.06

4.33

1.14e-08

CL:5274

Mixed, incl. Male germ-line stem cell asymmetric division, and Meiotic sister chromatid cohesion

2 of 6

2.75

1.24

0.0056

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-5689880

Ub-specific processing proteases

4 of 182

1.57

1.11

0.0039

MAP-5688426

Deubiquitination

4 of 250

1.44

0.96

0.0068

MAP-141430

Inactivation of APC/C via direct inhibition of the APC/C complex

2 of 18

2.28

0.86

0.0266

MAP-141405

Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components

2 of 18

2.28

0.86

0.0266

MAP-179409

APC-Cdc20 mediated degradation of Nek2A

2 of 22

2.19

0.85

0.0266

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF13423

Ubiquitin carboxyl-terminal hydrolase

3 of 13

2.6

2.16

0.00010

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR001394

Peptidase C19, ubiquitin carboxyl-terminal hydrolase

4 of 22

2.49

2.88

3.41e-06

IPR028889

Ubiquitin specific protease domain

4 of 24

2.45

2.87

3.41e-06

IPR038765

Papain-like cysteine peptidase superfamily

5 of 101

1.93

2.52

3.41e-06

IPR018200

Ubiquitin specific protease, conserved site

3 of 20

2.41

1.93

0.00024

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