STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103712780Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic. (810 aa)    
Predicted Functional Partners:
LOC103714942
CRS2-associated factor 2, chloroplastic.
 
  
 
 0.575
LOC103697308
Ribonuclease III domain-containing protein RNC1, chloroplastic.
    
 
 0.573
LOC103696016
Transcription termination factor MTERF4, chloroplastic-like.
      
 0.552
LOC103722156
Protein WHAT'S THIS FACTOR 1 homolog.
    
 
 0.521
atpF
ATP synthase subunit b, chloroplastic; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).
      
 0.519
LOC113462233
Uncharacterized protein LOC113462233.
      
 0.518
LOC103721332
Single-stranded DNA-binding protein WHY1, chloroplastic-like.
      
 0.516
LOC103721194
CRS2-associated factor 1, mitochondrial isoform X1.
 
    
 0.508
ndhA
NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic; NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.
      
 0.501
LOC103715601
LOW QUALITY PROTEIN: CRS2-associated factor 1, chloroplastic-like.
 
  
 
0.474
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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