STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103713407Probable long-chain-alcohol O-fatty-acyltransferase 4. (345 aa)    
Predicted Functional Partners:
LOC103702086
Ras-related protein Rab-21-like isoform X1.
   
 0.672
LOC103703387
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.569
LOC103717757
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.569
LOC103697899
ubiquitin-60S ribosomal protein L40.
    
  0.547
LOC103701425
Kinesin-like protein KIN-14I isoform X1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.525
LOC103702248
Kinesin-like protein KIN-14I isoform X1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.525
LOC103697597
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.495
LOC103710960
Serine/threonine-protein phosphatase.
    
 0.495
LOC103724233
Serine/threonine-protein phosphatase BSL1 homolog isoform X1.
    
 0.495
LOC103716312
Translation initiation factor eIF-2B subunit beta isoform X1; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
   0.473
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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