STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103713880Transcription termination factor MTERF6, chloroplastic/mitochondrial. (362 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.565
LOC103698269
Transcription termination factor MTERF15, mitochondrial.
      
 0.564
LOC103724270
50S ribosomal protein 5 alpha, chloroplastic isoform X1.
   
   0.499
LOC103723436
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14.
   
  
 0.485
LOC103723700
Uncharacterized protein LOC103723700.
   
  
 0.454
LOC103713006
SAP-like protein BP-73.
   
  
 0.438
LOC103719941
Uncharacterized protein LOC103719941.
   
  
 0.428
psbJ
Photosystem II reaction center protein J; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.
      
 0.420
rps3
30S ribosomal protein S3, chloroplastic; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.415
LOC103708925
Pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like.
  
 
   0.409
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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