STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103714084AAA-ATPase At3g50940-like; Belongs to the AAA ATPase family. (497 aa)    
Predicted Functional Partners:
LOC103709766
Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
  
 0.637
LOC103703492
30S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.549
LOC103712302
30S ribosomal protein S9, chloroplastic; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.549
LOC103724270
50S ribosomal protein 5 alpha, chloroplastic isoform X1.
    
   0.516
rpl16
50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.491
rps3
30S ribosomal protein S3, chloroplastic; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.491
rpl16-2
50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.491
rpl16-3
Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.491
LOC103704671
50S ribosomal protein L19-1, chloroplastic-like.
  
   0.489
LOC103715500
50S ribosomal protein L19-2, chloroplastic-like isoform X1.
  
   0.489
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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