STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103714530Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (997 aa)    
Predicted Functional Partners:
LOC103702283
Citrate synthase; Belongs to the citrate synthase family.
  
 0.995
LOC103710265
Citrate synthase.
  
 0.995
LOC103718421
Citrate synthase; Belongs to the citrate synthase family.
  
 0.995
LOC103723409
Citrate synthase.
  
 0.995
LOC103723130
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.994
LOC103702977
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.993
LOC103713328
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.993
LOC103716821
Isocitrate lyase.
  
 0.984
LOC103701351
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.972
LOC103719942
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.972
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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