LOC103715114 protein (Phoenix dactylifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103715114

Swi5-dependent recombination DNA repair protein 1 homolog. (215 aa)

Predicted Functional Partners:

LOC103719269

0.998

LOC103702683

0.997

LOC103712849

0.997

LOC103722595

0.991

LOC103723351

0.989

LOC103706433

0.985

LOC103724044

0.981

LOC103699115

0.979

LOC103714142

0.975

LOC103716333

0.975

Your Current Organism:

Phoenix dactylifera

NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103699115	LOC103702683	A0A2H3ZK46	A0A2H3XGJ5	DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	DNA-directed RNA polymerase I subunit rpa49.	0.993
LOC103699115	LOC103706433	A0A2H3ZK46	A0A3Q0I3W1	DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.993
LOC103699115	LOC103712849	A0A2H3ZK46	A0A2H3YFH3	DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	DNA-directed RNA polymerases I and III subunit rpac1.	0.996
LOC103699115	LOC103714142	A0A2H3ZK46	A0A2H3YIZ8	DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	DNA-directed RNA polymerases II, IV and V subunit 6A-like.	0.989
LOC103699115	LOC103715114	A0A2H3ZK46	A0A2H3YMJ4	DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Swi5-dependent recombination DNA repair protein 1 homolog.	0.979
LOC103699115	LOC103716333	A0A2H3ZK46	A0A2H3YRQ0	DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	DNA-directed RNA polymerases II, IV and V subunit 6A-like.	0.989
LOC103699115	LOC103719269	A0A2H3ZK46	A0A2H3Z117	DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.993
LOC103699115	LOC103722595	A0A2H3ZK46	A0A2H3ZBU0	DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Probable DNA-directed RNA polymerase I subunit RPA43 isoform X1.	0.995
LOC103699115	LOC103723351	A0A2H3ZK46	A0A2H3ZE99	DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	DNA-directed RNA polymerases I and III subunit RPAC2.	0.998
LOC103699115	LOC103724044	A0A2H3ZK46	A0A2H3ZH17	DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.994
LOC103702683	LOC103699115	A0A2H3XGJ5	A0A2H3ZK46	DNA-directed RNA polymerase I subunit rpa49.	DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.993
LOC103702683	LOC103706433	A0A2H3XGJ5	A0A3Q0I3W1	DNA-directed RNA polymerase I subunit rpa49.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.974
LOC103702683	LOC103712849	A0A2H3XGJ5	A0A2H3YFH3	DNA-directed RNA polymerase I subunit rpa49.	DNA-directed RNA polymerases I and III subunit rpac1.	0.998
LOC103702683	LOC103714142	A0A2H3XGJ5	A0A2H3YIZ8	DNA-directed RNA polymerase I subunit rpa49.	DNA-directed RNA polymerases II, IV and V subunit 6A-like.	0.986
LOC103702683	LOC103715114	A0A2H3XGJ5	A0A2H3YMJ4	DNA-directed RNA polymerase I subunit rpa49.	Swi5-dependent recombination DNA repair protein 1 homolog.	0.997
LOC103702683	LOC103716333	A0A2H3XGJ5	A0A2H3YRQ0	DNA-directed RNA polymerase I subunit rpa49.	DNA-directed RNA polymerases II, IV and V subunit 6A-like.	0.986
LOC103702683	LOC103719269	A0A2H3XGJ5	A0A2H3Z117	DNA-directed RNA polymerase I subunit rpa49.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
LOC103702683	LOC103722595	A0A2H3XGJ5	A0A2H3ZBU0	DNA-directed RNA polymerase I subunit rpa49.	Probable DNA-directed RNA polymerase I subunit RPA43 isoform X1.	0.999
LOC103702683	LOC103723351	A0A2H3XGJ5	A0A2H3ZE99	DNA-directed RNA polymerase I subunit rpa49.	DNA-directed RNA polymerases I and III subunit RPAC2.	0.996
LOC103702683	LOC103724044	A0A2H3XGJ5	A0A2H3ZH17	DNA-directed RNA polymerase I subunit rpa49.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.854