STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC10371525330S ribosomal protein S13, chloroplastic; Belongs to the universal ribosomal protein uS13 family. (171 aa)    
Predicted Functional Partners:
LOC103706732
40S ribosomal protein S28.
   
 0.991
LOC103697899
ubiquitin-60S ribosomal protein L40.
  
 0.987
LOC103712849
DNA-directed RNA polymerases I and III subunit rpac1.
  
 
 0.979
LOC103708272
40S ribosomal protein S13-like; Belongs to the universal ribosomal protein uS15 family.
  
 0.978
LOC103717397
40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
  
 0.978
LOC103717777
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.978
LOC103722763
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.978
rps8
30S ribosomal protein S8, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.
 
 0.977
LOC103715470
Uncharacterized protein LOC103715470.
  
 
 0.976
rps7
30S ribosomal protein S7, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit.
  
 0.974
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.