STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103715477Poly [ADP-ribose] polymerase. (901 aa)    
Predicted Functional Partners:
LOC103706076
poly(ADP-ribose) glycohydrolase 1 isoform X3.
  
 
 0.920
LOC103708242
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase.
   
 
 0.756
LOC103717331
DNA repair protein RAD4.
    
 0.731
LOC103704542
ATP-dependent DNA helicase 2 subunit KU70 isoform X1.
    
 
 0.729
LOC103705199
Nijmegen breakage syndrome 1 protein isoform X1.
    
 0.703
LOC103722997
cyclin-H1-1 isoform X1; Belongs to the cyclin family.
     
 0.700
LOC103718149
LOW QUALITY PROTEIN: general transcription and DNA repair factor IIH helicase subunit XPD.
   
 0.684
LOC103719170
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
    
 0.683
LOC103704458
DNA-repair protein XRCC1 isoform X1.
    
 
 0.659
LOC103696436
Protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like.
    
 0.655
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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