STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103716066Probable low-specificity L-threonine aldolase 1. (359 aa)    
Predicted Functional Partners:
LOC103723389
Serine--glyoxylate aminotransferase isoform X1.
    
 0.983
LOC103712858
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
    
 0.980
LOC103720219
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
    
 0.980
LOC103710185
Threonine dehydratase.
  
 
 0.952
LOC103712033
Threonine dehydratase.
  
 
 0.952
LOC103722608
Probable sarcosine oxidase.
    
 0.938
LOC103714115
Probable sarcosine oxidase.
    
 0.938
LOC103696913
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
   
 0.934
LOC103701327
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
   
 0.934
LOC103702634
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
   
 0.934
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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