STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103716357Stem-specific protein TSJT1-like. (251 aa)    
Predicted Functional Partners:
LOC103719620
Splicing factor 3B subunit 1.
   
 
 0.820
LOC103701697
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 
 0.811
LOC103719116
PHD finger-like domain-containing protein 5B.
   
 
 0.792
LOC103698069
Splicing factor 3B subunit 2-like.
 
 
 
 0.778
LOC103721496
Nuclear cap-binding protein subunit 2.
    
 0.724
LOC103715760
Cell division cycle 5-like protein.
   
 0.722
LOC103719325
Cell division cycle 5-like protein.
   
 0.722
LOC103696251
Probable small nuclear ribonucleoprotein F isoform X1.
   
 
 0.707
LOC103720419
Probable small nuclear ribonucleoprotein F isoform X1.
   
 
 0.707
LOC103701431
pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7.
   
 0.701
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.