STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103716421ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like. (1168 aa)    
Predicted Functional Partners:
LOC103717346
Prohibitin.
   
 0.756
LOC103721125
Prohibitin.
   
 0.756
LOC103709766
Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
  
 0.637
LOC103724270
50S ribosomal protein 5 alpha, chloroplastic isoform X1.
    
 
 0.622
LOC103704808
Prohibitin.
   
 0.619
LOC103711059
Prohibitin.
   
 0.619
LOC103716616
Prohibitin.
   
 0.619
LOC103717159
Prohibitin.
   
 0.619
LOC103707530
50S ribosomal protein L5, chloroplastic.
   
   0.595
LOC103723126
Uncharacterized protein LOC103723126.
    
   0.576
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.