STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103717058Probable tyrosine-protein phosphatase DSP4. (227 aa)    
Predicted Functional Partners:
LOC103705445
Photosystem I reaction center subunit III, chloroplastic.
   
 
 0.885
LOC103710511
Photosystem I reaction center subunit psaK, chloroplastic.
   
 
 0.884
LOC103697036
Photosystem I reaction center subunit IV, chloroplastic-like.
   
 
 0.883
LOC103716456
Photosystem I reaction center subunit II, chloroplastic-like.
   
 
 0.882
psaI
Photosystem I reaction center subunit VIII; May help in the organization of the PsaL subunit. Belongs to the PsaI family.
    
 
 0.857
LOC103720518
Photosystem I reaction center subunit N, chloroplastic.
   
 
 0.833
LOC103703121
Photosystem I subunit O.
   
 
 0.825
LOC103711977
Photosystem I reaction center subunit V, chloroplastic-like.
   
 
 0.825
LOC103718464
Photosystem I reaction center subunit V, chloroplastic-like.
   
 
 0.825
psaJ
Photosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family.
    
 
 0.825
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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