STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103717452E3 ubiquitin-protein ligase RNF43-like. (189 aa)    
Predicted Functional Partners:
LOC103715319
Ubiquitin-conjugating enzyme E2 27 isoform X1; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.470
LOC103721606
Autophagy-related protein.
      
 0.436
LOC103702922
Myb-related protein 340-like.
      
 0.429
LOC103722150
Transcription factor MYB57.
      
 0.429
LOC103695448
Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.
      
 0.410
LOC103715136
Probable ubiquitin-conjugating enzyme E2 37; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.409
LOC103705558
Uncharacterized protein LOC103705558.
      
 0.408
LOC103715512
E3 ubiquitin-protein ligase MARCH8-like isoform X1.
      
 0.408
LOC103697899
ubiquitin-60S ribosomal protein L40.
    
 0.407
LOC103703653
DNA helicase; Belongs to the MCM family.
      
 0.406
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.