STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103718481Beta-carotene 3-hydroxylase 2, chloroplastic-like; Belongs to the sterol desaturase family. (324 aa)    
Predicted Functional Partners:
LOC103722475
Lycopene beta cyclase, chloroplastic.
   
 
 0.962
LOC103721734
Violaxanthin de-epoxidase, chloroplastic; Belongs to the calycin superfamily. Lipocalin family.
     
 0.955
LOC103712512
Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin.
     
 0.954
LOC103719551
LOW QUALITY PROTEIN: carotene epsilon-monooxygenase, chloroplastic; Belongs to the cytochrome P450 family.
     
 0.950
LOC103706996
Protein LUTEIN DEFICIENT 5, chloroplastic; Belongs to the cytochrome P450 family.
     
 0.945
LOC103720202
Beta-carotene isomerase D27, chloroplastic-like.
     
 0.920
LOC103716373
Beta-carotene isomerase D27, chloroplastic-like.
     
 0.920
LOC103697897
Protein ORANGE-LIKE, chloroplastic.
  
   
 0.606
LOC103703106
Capsanthin/capsorubin synthase, chromoplastic-like.
   
  
 0.593
LOC103723715
Lycopene epsilon cyclase, chloroplastic.
      
 0.584
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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