STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103718864RNA pseudouridine synthase 4, mitochondrial-like. (247 aa)    
Predicted Functional Partners:
LOC103707335
Multisubstrate pseudouridine synthase 7 isoform X1.
    
 
 0.794
LOC103712039
Uncharacterized protein LOC103712039.
  
 
 0.756
LOC103705018
Short integuments 2, mitochondrial isoform X1.
   
 
 0.726
LOC103696701
50S ribosomal protein L24, chloroplastic; Belongs to the universal ribosomal protein uL24 family.
   
   0.710
LOC103701946
54S ribosomal protein L51, mitochondrial.
   
   0.704
LOC103699220
Protein Iojap-related, mitochondrial.
  
 
 0.702
LOC103714756
Protein Iojap-related, mitochondrial-like.
  
 
 0.702
LOC103696807
50S ribosomal protein L3-1, chloroplastic; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.606
LOC103707681
50S ribosomal protein L3-2, chloroplastic; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.606
LOC103712792
50S ribosomal protein L11, chloroplastic-like; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.595
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.