STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103719001Myb-binding protein 1A-like protein. (1309 aa)    
Predicted Functional Partners:
LOC103716322
Uncharacterized protein At3g06530.
   
 
 0.975
LOC103719269
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.954
LOC103713567
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.937
LOC103715114
Swi5-dependent recombination DNA repair protein 1 homolog.
   
 0.937
LOC103721552
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
   0.927
LOC103707616
Nucleolar protein 6.
   
  
 0.902
LOC103717859
Periodic tryptophan protein 2.
   
  
 0.902
LOC103706723
rRNA biogenesis protein RRP5 isoform X1.
   
  
 0.896
LOC103701637
DEAD-box ATP-dependent RNA helicase 29.
   
  0.893
LOC103695733
WD repeat-containing protein 3.
   
  
 0.891
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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