STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103719684Polygalacturonase-like. (392 aa)    
Predicted Functional Partners:
LOC103701457
Galacturonokinase isoform X1.
     
  0.800
LOC103718556
Pectate lyase.
     
 0.786
LOC103717730
Pectate lyase.
     
 0.747
LOC103723301
Pectate lyase.
     
 0.747
LOC103702909
Pectate lyase.
     
 0.724
LOC103710452
Pectate lyase.
     
 0.724
LOC103704989
Pectate lyase.
     
 0.721
LOC103709781
Pectate lyase.
     
 0.721
LOC103696953
Pectate lyase.
     
 0.694
LOC103711590
Pectate lyase.
     
 0.694
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.