STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC1037207704-coumarate--CoA ligase-like 1. (544 aa)    
Predicted Functional Partners:
LOC103695702
Aldehyde dehydrogenase family 2 member C4-like; Belongs to the aldehyde dehydrogenase family.
  
 0.959
LOC103720725
Aldehyde dehydrogenase family 2 member C4; Belongs to the aldehyde dehydrogenase family.
  
 0.959
LOC103716997
Caffeic acid 3-O-methyltransferase-like; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.
     
 0.938
LOC103710428
cinnamoyl-CoA reductase 1-like.
  
 
 0.884
LOC103714248
cinnamoyl-CoA reductase 1-like.
  
 
 0.884
LOC103702969
cinnamoyl-CoA reductase 1-like.
  
 
 0.880
LOC103708643
Phenylalanine ammonia-lyase.
    
 0.867
LOC103708669
Phenylalanine ammonia-lyase-like; Belongs to the PAL/histidase family.
    
 0.867
LOC103703950
Phenylalanine ammonia-lyase.
    
 0.864
LOC103718264
Phenylalanine ammonia-lyase.
    
 0.864
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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