STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103720829peptidyl-tRNA hydrolase, mitochondrial isoform X1; Belongs to the PTH family. (226 aa)    
Predicted Functional Partners:
LOC103706573
peptidyl-tRNA hydrolase ICT1, mitochondrial-like.
  
  
 0.693
LOC103713401
peptidyl-tRNA hydrolase ICT1, mitochondrial-like isoform X1.
  
  
 0.693
LOC103711869
Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
  
 
  0.676
LOC103697266
Obg-like ATPase 1.
  
  
 0.607
LOC103701578
NAC domain-containing protein 100-like.
  
  
 0.607
LOC103709826
Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.
  
  
 0.607
LOC103713824
Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.
  
  
 0.607
LOC103715519
Protein CUP-SHAPED COTYLEDON 2-like.
  
  
 0.607
LOC103717203
Cyclic phosphodiesterase-like.
  
  
 0.607
LOC103713103
Protein CUP-SHAPED COTYLEDON 2-like isoform X1.
  
  
 0.607
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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