STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103721163A disintegrin and metalloproteinase with thrombospondin motifs 7-like. (267 aa)    
Predicted Functional Partners:
LOC103697899
ubiquitin-60S ribosomal protein L40.
    
  0.575
LOC103703540
Arginase 1, mitochondrial; Belongs to the arginase family.
   
 
 0.553
LOC103705552
Chlorophyllase-1.
    
 0.525
LOC103712111
Uncharacterized protein LOC103712111 isoform X1.
    
 0.525
LOC103702709
Guanine nucleotide-binding protein subunit beta.
    
  0.464
LOC103705391
Guanine nucleotide-binding protein subunit beta-like.
    
  0.464
LOC103714770
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
    
 0.436
LOC103717306
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
 0.436
LOC103719342
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
    
 0.436
LOC103723316
AUGMIN subunit 6 isoform X1.
    
 0.408
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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