LOC103722118 protein (Phoenix dactylifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103722118

Mitochondrial thiamine diphosphate carrier 2-like; Belongs to the mitochondrial carrier (TC 2.A.29) family. (331 aa)

Predicted Functional Partners:

LOC103723570

0.431

LOC103706732

0.418

LOC103707509

0.418

LOC103701236

0.416

LOC103717010

0.416

LOC103724035

0.416

LOC103707514

0.412

LOC103709428

0.412

LOC103704834

0.410

Your Current Organism:

Phoenix dactylifera

NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103701236	LOC103704834	A0A2H3XBS6	A0A2H3XNN1	LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212.	Probable thiamine biosynthetic bifunctional enzyme, chloroplastic isoform X1.	0.530
LOC103701236	LOC103707509	A0A2H3XBS6	A0A2H3XXI1	LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212.	Lecithin-cholesterol acyltransferase-like 1.	0.567
LOC103701236	LOC103709428	A0A2H3XBS6	A0A2H3Y3P2	LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212.	Nudix hydrolase 20, chloroplastic-like isoform X1.	0.518
LOC103701236	LOC103717010	A0A2H3XBS6	A0A2H3YTK8	LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212.	Purine-uracil permease NCS1.	0.499
LOC103701236	LOC103722118	A0A2H3XBS6	A0A2H3ZA88	LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212.	Mitochondrial thiamine diphosphate carrier 2-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.416
LOC103701236	LOC103723570	A0A2H3XBS6	A0A2H3ZFL9	LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212.	Hydroxyethylthiazole kinase.	0.570
LOC103701236	LOC103724035	A0A2H3XBS6	A0A2H3ZGC0	LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212.	Bifunctional TENA2 protein.	0.515
LOC103704834	LOC103701236	A0A2H3XNN1	A0A2H3XBS6	Probable thiamine biosynthetic bifunctional enzyme, chloroplastic isoform X1.	LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212.	0.530
LOC103704834	LOC103709428	A0A2H3XNN1	A0A2H3Y3P2	Probable thiamine biosynthetic bifunctional enzyme, chloroplastic isoform X1.	Nudix hydrolase 20, chloroplastic-like isoform X1.	0.643
LOC103704834	LOC103717010	A0A2H3XNN1	A0A2H3YTK8	Probable thiamine biosynthetic bifunctional enzyme, chloroplastic isoform X1.	Purine-uracil permease NCS1.	0.541
LOC103704834	LOC103722118	A0A2H3XNN1	A0A2H3ZA88	Probable thiamine biosynthetic bifunctional enzyme, chloroplastic isoform X1.	Mitochondrial thiamine diphosphate carrier 2-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.410
LOC103704834	LOC103723570	A0A2H3XNN1	A0A2H3ZFL9	Probable thiamine biosynthetic bifunctional enzyme, chloroplastic isoform X1.	Hydroxyethylthiazole kinase.	0.975
LOC103704834	LOC103724035	A0A2H3XNN1	A0A2H3ZGC0	Probable thiamine biosynthetic bifunctional enzyme, chloroplastic isoform X1.	Bifunctional TENA2 protein.	0.949
LOC103706732	LOC103722118	A0A2H3XV07	A0A2H3ZA88	40S ribosomal protein S28.	Mitochondrial thiamine diphosphate carrier 2-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.418
LOC103707509	LOC103701236	A0A2H3XXI1	A0A2H3XBS6	Lecithin-cholesterol acyltransferase-like 1.	LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212.	0.567
LOC103707509	LOC103717010	A0A2H3XXI1	A0A2H3YTK8	Lecithin-cholesterol acyltransferase-like 1.	Purine-uracil permease NCS1.	0.431
LOC103707509	LOC103722118	A0A2H3XXI1	A0A2H3ZA88	Lecithin-cholesterol acyltransferase-like 1.	Mitochondrial thiamine diphosphate carrier 2-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.418
LOC103707509	LOC103724035	A0A2H3XXI1	A0A2H3ZGC0	Lecithin-cholesterol acyltransferase-like 1.	Bifunctional TENA2 protein.	0.501
LOC103707514	LOC103722118	A0A2H3XXI6	A0A2H3ZA88	ACT domain-containing protein ACR3-like isoform X1.	Mitochondrial thiamine diphosphate carrier 2-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.412
LOC103709428	LOC103701236	A0A2H3Y3P2	A0A2H3XBS6	Nudix hydrolase 20, chloroplastic-like isoform X1.	LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212.	0.518