STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103723669arginyl-tRNA--protein transferase 2. (649 aa)    
Predicted Functional Partners:
LOC103721993
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.780
LOC103703591
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.780
LOC103718424
Protein N-terminal asparagine amidohydrolase isoform X1.
    
 
 0.597
LOC103701663
Protein N-terminal glutamine amidohydrolase isoform X1.
      
 0.573
LOC103712757
Auxin transport protein BIG.
      
 0.565
LOC103703909
E3 ubiquitin-protein ligase PRT1.
   
  
 0.528
LOC103696410
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1.
      
 0.518
LOC103698883
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1.
      
 0.518
LOC103721155
LOW QUALITY PROTEIN: translation initiation factor IF3-1, mitochondrial.
      
 0.516
LOC103698310
ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like.
   
  
 0.512
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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