STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC10372427050S ribosomal protein 5 alpha, chloroplastic isoform X1. (153 aa)    
Predicted Functional Partners:
LOC103696701
50S ribosomal protein L24, chloroplastic; Belongs to the universal ribosomal protein uL24 family.
   
 
 0.945
LOC103696807
50S ribosomal protein L3-1, chloroplastic; Belongs to the universal ribosomal protein uL3 family.
   
   0.926
LOC103710874
50S ribosomal protein L21, chloroplastic.
   
   0.926
LOC103717875
50S ribosomal protein L17, chloroplastic; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.925
LOC103716674
50S ribosomal protein L6, chloroplastic; Belongs to the universal ribosomal protein uL6 family.
   
 
 0.924
LOC103707530
50S ribosomal protein L5, chloroplastic.
   
   0.922
LOC103704031
30S ribosomal protein S31, chloroplastic.
   
 
 0.919
LOC103695592
50S ribosomal protein L18, chloroplastic.
   
   0.910
LOC103698850
50S ribosomal protein L9, chloroplastic.
   
   0.910
LOC103697616
50S ribosomal protein L15, chloroplastic-like; Belongs to the universal ribosomal protein uL15 family.
   
   0.910
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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