STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103724380Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (94 aa)    
Predicted Functional Partners:
LOC103712849
DNA-directed RNA polymerases I and III subunit rpac1.
   
 
 0.836
LOC103711254
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
   
 
 0.830
LOC103706776
DNA-directed RNA polymerases II, IV and V subunit 11.
   
   0.828
LOC103723766
DNA-directed RNA polymerase II subunit 4 isoform X1.
   
   0.827
LOC103699115
DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
   0.798
LOC103696837
Protein CDC73 homolog.
    
   0.789
LOC103716802
DNA-directed RNA polymerases IV and V subunit 4 isoform X1.
   
   0.777
LOC103706290
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.
    
 
 0.774
LOC103701345
DNA-directed RNA polymerase subunit 10-like protein.
   
   0.761
LOC103719943
DNA-directed RNA polymerase subunit 10-like protein.
   
   0.761
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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