STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103701170Fanconi anemia group J protein homolog. (1297 aa)    
Predicted Functional Partners:
LOC103701128
BRCT domain-containing protein At4g02110.
   
 0.988
LOC103701358
DNA topoisomerase 2-binding protein 1-A isoform X1.
   
 0.988
LOC103707435
Pentatricopeptide repeat-containing protein At4g30825, chloroplastic.
    
 0.963
LOC103716019
General transcription and DNA repair factor IIH subunit TFB4 isoform X1.
    
 0.962
LOC103698213
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.961
LOC103712337
Cyclin-dependent kinase D-1-like; Belongs to the protein kinase superfamily.
    
 0.959
LOC103722997
cyclin-H1-1 isoform X1; Belongs to the cyclin family.
    
 0.958
LOC103705199
Nijmegen breakage syndrome 1 protein isoform X1.
    
 0.955
LOC103712778
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
    
 0.949
LOC103697841
General transcription factor IIH subunit 2-like isoform X1.
    
 0.944
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.