STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103720603Histone deacetylase 15. (359 aa)    
Predicted Functional Partners:
LOC103701064
High mobility group B protein 9.
    
 0.811
LOC103708729
High mobility group B protein 9-like.
    
 0.811
LOC103710645
High mobility group B protein 15-like.
    
 0.811
LOC103724208
High mobility group B protein 15-like.
    
 0.811
LOC103723801
High mobility group B protein 9-like.
    
 0.811
LOC103697941
High mobility group B protein 15-like isoform X1.
    
 0.811
LOC103718821
High mobility group B protein 9-like.
    
 0.811
LOC103697899
ubiquitin-60S ribosomal protein L40.
    
  0.790
LOC103709297
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
  
 
0.777
LOC103696185
Chromatin structure-remodeling complex protein SYD-like.
    
 0.751
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.