STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103722618Protein TRANSPARENT TESTA 9-like isoform X1. (839 aa)    
Predicted Functional Partners:
LOC103711264
RNA helicase aquarius.
      
 0.536
LOC103696454
Protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like.
      
 0.518
LOC103696790
Probable arabinosyltransferase ARAD1; Belongs to the glycosyltransferase 47 family.
      
 0.501
LOC103723113
Vacuolar protein-sorting-associated protein 33 homolog; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.454
LOC103705003
Probable arabinosyltransferase ARAD1; Belongs to the glycosyltransferase 47 family.
      
 0.434
LOC103720240
Protein SCO1 homolog 2, mitochondrial isoform X1.
      
 0.431
LOC113460994
Protein SCO1 homolog 1, mitochondrial-like.
      
 0.431
LOC103697974
Probable AMP deaminase.
      
 0.428
LOC103706702
Uncharacterized protein LOC103706702.
      
 0.428
LOC103711236
Protein SODIUM POTASSIUM ROOT DEFECTIVE 2-like.
      
 0.416
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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