STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113461067Uncharacterized protein LOC113461067. (353 aa)    
Predicted Functional Partners:
LOC103715761
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2.
   
 0.865
LOC103709670
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2.
   
 0.865
LOC103719306
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1.
   
 0.865
LOC103723556
110 kDa U5 small nuclear ribonucleoprotein component CLO-like.
   
 
 0.852
LOC103706735
pre-mRNA-splicing factor SYF1.
   
 
 0.839
LOC103711492
pre-mRNA-processing-splicing factor 8A.
    
 
 0.828
LOC103708791
Crooked neck-like protein 1.
   
   0.818
LOC103723728
LOW QUALITY PROTEIN: SNW/SKI-interacting protein A-like.
    
 
 0.815
LOC103720282
Uncharacterized protein LOC103720282.
    
  0.779
LOC103722123
pre-mRNA-splicing factor syf2.
    
  0.779
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.